Skip to content
@theislab

Theis Lab

Theis Lab at Institute of Computational Biology, Helmholtz Munich

Pinned Loading

  1. single-cell-best-practices single-cell-best-practices Public

    https://www.sc-best-practices.org

    Jupyter Notebook 1.2k 264

  2. scvelo scvelo Public

    RNA Velocity generalized through dynamical modeling

    Python 496 111

  3. scarches scarches Public

    Reference mapping for single-cell genomics

    Jupyter Notebook 402 70

  4. scib scib Public

    Benchmarking analysis of data integration tools

    Python 411 76

  5. ehrapy ehrapy Public

    Electronic Health Record Analysis with Python.

    Python 339 45

  6. moscot moscot Public

    Multi-omic single-cell optimal transport tools

    Python 203 17

Repositories

Showing 10 of 255 repositories
  • gh-dashboard Public

    A dashboard of everything in the theislab GitHub repository

    theislab/gh-dashboard’s past year of commit activity
    HTML 8 0 1 0 Updated Apr 17, 2026
  • CellFlow2 Public

    Modeling complex perturbations with CellFlow

    theislab/CellFlow2’s past year of commit activity
    Python 9 2 0 0 Updated Apr 16, 2026
  • ehrapy Public

    Electronic Health Record Analysis with Python.

    theislab/ehrapy’s past year of commit activity
    Python 339 Apache-2.0 45 20 2 Updated Apr 16, 2026
  • zellkonverter Public

    Conversion between scRNA-seq objects

    theislab/zellkonverter’s past year of commit activity
    R 205 32 14 2 Updated Apr 16, 2026
  • destiny Public

    R package for single cell and other data analysis using diffusion maps

    theislab/destiny’s past year of commit activity
    R 97 GPL-3.0 13 31 0 Updated Apr 15, 2026
  • scib Public

    Benchmarking analysis of data integration tools

    theislab/scib’s past year of commit activity
    Python 411 MIT 76 38 9 Updated Apr 15, 2026
  • scConcept Public

    Contrastive pre-training for technology-agnostic single-cell representations beyond reconstruction

    theislab/scConcept’s past year of commit activity
    Python 24 MIT 3 0 0 Updated Apr 15, 2026
  • cellink Public

    Scalable framework for integrating single-cell omics with genetic data using AnnData.

    theislab/cellink’s past year of commit activity
    Python 14 Apache-2.0 4 8 4 Updated Apr 14, 2026
  • lamin_dataloader Public
    theislab/lamin_dataloader’s past year of commit activity
    Python 0 2 0 0 Updated Apr 14, 2026
  • anndata2ri Public

    Convert between AnnData and SingleCellExperiment

    theislab/anndata2ri’s past year of commit activity
    Python 149 GPL-3.0 19 13 0 Updated Apr 14, 2026
View all repositories

Top languages

Loading…

Most used topics

Loading…